FastQCFastQC Report
Wed 5 Aug 2015
trimmedpyr7a.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametrimmedpyr7a.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96201
Sequences flagged as poor quality0
Sequence length36-50
%GC64

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGCATCGAATCAAGGGAAGCGTGCCGGTGCAGGCAAGAGACCACCGTA18961.970873483643621No Hit
GTTCGGTCTCCCGACCCGGGCGCCCAGCATGGTTCCCGGCACCCACGCGG10411.0821093335828111No Hit
CGGCATTCCCTCAAGGCTTCTCCGTGCGCAGTTCGCTATGCCTCTGCTCG10211.061319528903026No Hit
CTCGGTTACCAAGCGTGCACTCCTGGGGTTGCGTGGGTGGCCTCGGCGAT8370.8700533258490036No Hit
CAAGCGTGCACTCCTGGGGTTGCGTGGGTGGCCTCGGCGATCTTGCGACG8260.8586189332751218No Hit
CCGGGTCCTACGGCATTCCCTCAAGGCTTCTCCGTGCGCAGTTCGCTATG8110.8430265797652831No Hit
GCTCGATCCAGAAGAGAAGGTTCGGTCTCCCGACCCGGGCGCCCAGCATG7300.7588278708121537No Hit
CGACTTCGCGCATCGAATCAAGGGAAGCGTGCCGGTGCAGGCAAGAGACC6560.6819055934969491No Hit
CGGGAATCGAACCCGGGTCCTACGGCATTCCCTCAAGGCTTCTCCGTGCG6270.6517603767112609No Hit
CGCCGATTCACATCAGCGCGACTACGCTCTCGCTGCCTAAGCGACGGCTA5800.6029043357137659No Hit
GTTCGCTATGCCTCTGCTCGGATCTCCCGGTCACGCGAACTAGCCGAGAT5090.5291005291005291No Hit
ATCGAATCAAGGGAAGCGTGCCGGTGCAGGCAAGAGACCACCGTAAGCGT4400.4573757029552707No Hit
CGGCGATCTTGCGACGCTTCTAGCTGTAGCCCCACCCAAAGGGCCGTCGA4150.4313884471055395No Hit
GCGCAGTTCGCTATGCCTCTGCTCGGATCTCCCGGTCACGCGAACTAGCC4070.4230725252336255No Hit
CTTCGCGCATCGAATCAAGGGAAGCGTGCCGGTGCAGGCAAGAGACCACC3790.39396679868192636No Hit
CTCGCGTAGGGCTTGTGTGGATTCACGAGGTTCAGCGTCGAGTCGAGGAA3680.3825324061080446No Hit
CAAGAGACCACCGTAAGCGTCGTTGCGACCAAATAAGCGCCGATTCACAT3680.3825324061080446No Hit
CTCGGATCTCCCGGTCACGCGAACTAGCCGAGATGACGATCCCAGTCGCT3640.37837444517208757No Hit
TTCGACTTCGCGCATCGAATCAAGGGAAGCGTGCCGGTGCAGGCAAGAGA3410.3544661697903348No Hit
CTCAAGGCTTCTCCGTGCGCAGTTCGCTATGCCTCTGCTCGGATCTCCCG3360.34926871862038855No Hit
GTGCACTCCTGGGGTTGCGTGGGTGGCCTCGGCGATCTTGCGACGCTTCT3340.34718973815241005No Hit
CAGAAGAGAAGGTTCGGTCTCCCGACCCGGGCGCCCAGCATGGTTCCCGG3260.33887381628049607No Hit
CCGGTGCAGGCAAGAGACCACCGTAAGCGTCGTTGCGACCAAATAAGCGC3030.31496554089874323No Hit
TCTCGGTTACCAAGCGTGCACTCCTGGGGTTGCGTGGGTGGCCTCGGCGA2820.293136245984969No Hit
TCGACTTCGCGCATCGAATCAAGGGAAGCGTGCCGGTGCAGGCAAGAGAC2800.29105726551699046No Hit
CAAGGCTCGATCCAGAAGAGAAGGTTCGGTCTCCCGACCCGGGCGCCCAG2720.2827413436450764No Hit
CTTCTCCGTGCGCAGTTCGCTATGCCTCTGCTCGGATCTCCCGGTCACGC2680.2785833827091194No Hit
GCCGGTGCAGGCAAGAGACCACCGTAAGCGTCGTTGCGACCAAATAAGCG2650.27546491200715173No Hit
ATTCCCTCAAGGCTTCTCCGTGCGCAGTTCGCTATGCCTCTGCTCGGATC2390.24843816592343115No Hit
GCACTCCTGGGGTTGCGTGGGTGGCCTCGGCGATCTTGCGACGCTTCTAG2390.24843816592343115No Hit
CTCGATCCAGAAGAGAAGGTTCGGTCTCCCGACCCGGGCGCCCAGCATGG2380.2473986756894419No Hit
CCCGGGTCCTACGGCATTCCCTCAAGGCTTCTCCGTGCGCAGTTCGCTAT2320.24116173428550639No Hit
CTGGGGTTGCGTGGGTGGCCTCGGCGATCTTGCGACGCTTCTAGCTGTAG2130.2214114198397106No Hit
CCGACCCGGGCGCCCAGCATGGTTCCCGGCACCCACGCGGAGTCATAGCC2110.21933243937173208No Hit
AGAAGAGAAGGTTCGGTCTCCCGACCCGGGCGCCCAGCATGGTTCCCGGC2000.20789804679785034No Hit
CCTGGGGTTGCGTGGGTGGCCTCGGCGATCTTGCGACGCTTCTAGCTGTA1940.2016611053939148No Hit
CCGGCACCCACGCGGAGTCATAGCCACGATAACGGCAGAAGTGTTGCGGG1930.20062161515992555No Hit
CGGTTACCAAGCGTGCACTCCTGGGGTTGCGTGGGTGGCCTCGGCGATCT1920.19958212492593633No Hit
AAGAGACCACCGTAAGCGTCGTTGCGACCAAATAAGCGCCGATTCACATC1850.19230569328801156No Hit
CAAGGCTTCTCCGTGCGCAGTTCGCTATGCCTCTGCTCGGATCTCCCGGT1820.18918722258604379No Hit
CCACCGTAAGCGTCGTTGCGACCAAATAAGCGCCGATTCACATCAGCGCG1810.18814773235205456No Hit
CGCGAACTAGCCGAGATGACGATCCCAGTCGCTGTGGTTGTCCCGAGGAG1780.18502926165008682No Hit
CGAACCCGGGTCCTACGGCATTCCCTCAAGGCTTCTCCGTGCGCAGTTCG1760.1829502811821083No Hit
TCGGTCTCCCGACCCGGGCGCCCAGCATGGTTCCCGGCACCCACGCGGAG1740.1808713007141298No Hit
GCGTGCACTCCTGGGGTTGCGTGGGTGGCCTCGGCGATCTTGCGACGCTT1640.17047639837423728No Hit
CGCAGTTCGCTATGCCTCTGCTCGGATCTCCCGGTCACGCGAACTAGCCG1570.1631999667363125No Hit
GTCGTTGCGACCAAATAAGCGCCGATTCACATCAGCGCGACTACGCTCTC1570.1631999667363125No Hit
CCAGAAGAGAAGGTTCGGTCTCCCGACCCGGGCGCCCAGCATGGTTCCCG1560.16216047650232326No Hit
CGCGGCTCGCGTAGGGCTTGTGTGGATTCACGAGGTTCAGCGTCGAGTCG1540.16008149603434477No Hit
TCGATCCAGAAGAGAAGGTTCGGTCTCCCGACCCGGGCGCCCAGCATGGT1530.1590420058003555No Hit
CAAATAAGCGCCGATTCACATCAGCGCGACTACGCTCTCGCTGCCTAAGC1510.156963025332377No Hit
GAGAAGGTTCGGTCTCCCGACCCGGGCGCCCAGCATGGTTCCCGGCACCC1500.15592353509838774No Hit
CCGTAAGCGTCGTTGCGACCAAATAAGCGCCGATTCACATCAGCGCGACT1490.1548840448643985No Hit
AGAGAAGGTTCGGTCTCCCGACCCGGGCGCCCAGCATGGTTCCCGGCACC1440.14968659369445225No Hit
ATCGAACCCGGGTCCTACGGCATTCCCTCAAGGCTTCTCCGTGCGCAGTT1410.1465681229924845No Hit
GGTTACCAAGCGTGCACTCCTGGGGTTGCGTGGGTGGCCTCGGCGATCTT1400.14552863275849523No Hit
CGTAAGCGTCGTTGCGACCAAATAAGCGCCGATTCACATCAGCGCGACTA1400.14552863275849523No Hit
CACTCCTGGGGTTGCGTGGGTGGCCTCGGCGATCTTGCGACGCTTCTAGC1370.14241016205652748No Hit
GCGTGGGTGGCCTCGGCGATCTTGCGACGCTTCTAGCTGTAGCCCCACCC1360.1413706718225382No Hit
TGCACTCCTGGGGTTGCGTGGGTGGCCTCGGCGATCTTGCGACGCTTCTA1340.1392916913545597No Hit
AAATAAGCGCCGATTCACATCAGCGCGACTACGCTCTCGCTGCCTAAGCG1310.13617322065259196No Hit
CGATCCAGAAGAGAAGGTTCGGTCTCCCGACCCGGGCGCCCAGCATGGTT1290.13409424018461347No Hit
GAAGGTTCGGTCTCCCGACCCGGGCGCCCAGCATGGTTCCCGGCACCCAC1290.13409424018461347No Hit
CGGATCTCCCGGTCACGCGAACTAGCCGAGATGACGATCCCAGTCGCTGT1290.13409424018461347No Hit
CCCGACCCGGGCGCCCAGCATGGTTCCCGGCACCCACGCGGAGTCATAGC1160.12058086714275319No Hit
CTCGGCGATCTTGCGACGCTTCTAGCTGTAGCCCCACCCAAAGGGCCGTC1150.11954137690876394No Hit
GCCAAGGCTCGATCCAGAAGAGAAGGTTCGGTCTCCCGACCCGGGCGCCC1150.11954137690876394No Hit
CTACGGCATTCCCTCAAGGCTTCTCCGTGCGCAGTTCGCTATGCCTCTGC1140.11850188667477468No Hit
GCAGTTCGCTATGCCTCTGCTCGGATCTCCCGGTCACGCGAACTAGCCGA1130.11746239644078545No Hit
CGCGACCGGACTCATCGGTGGATCCCTCTAGCTGATGCCAGGGTCCGGGC1120.11642290620679618No Hit
TTCGCGCATCGAATCAAGGGAAGCGTGCCGGTGCAGGCAAGAGACCACCG1110.11538341597280694No Hit
CGCATCGAATCAAGGGAAGCGTGCCGGTGCAGGCAAGAGACCACCGTAAG1090.11330443550482844No Hit
CGACCAAATAAGCGCCGATTCACATCAGCGCGACTACGCTCTCGCTGCCT1070.11122545503684993No Hit
GCCGATTCACATCAGCGCGACTACGCTCTCGCTGCCTAAGCGACGGCTAG1060.11018596480286069No Hit
GTGCAGGCAAGAGACCACCGTAAGCGTCGTTGCGACCAAATAAGCGCCGA1040.10810698433488218No Hit
TTCGGTCTCCCGACCCGGGCGCCCAGCATGGTTCCCGGCACCCACGCGGA1010.10498851363291441No Hit
CGGGTCCTACGGCATTCCCTCAAGGCTTCTCCGTGCGCAGTTCGCTATGC970.1008305526969574No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGAATC551.4440047E-731.759592
AATCGAA551.4440047E-731.759595
TTCGACT502.4730052E-630.5686071
CGGGAAT651.8422725E-830.2326871
TCCCCAG300.00497582830.17959841
TCTTACC405.9131015E-428.29337341
CTCTTAC406.0830236E-428.15683740
GAATCGA656.233731E-726.8734994
CTCGGTT1400.026.5135861
CCTCGGA350.00962320226.3654244
GGAATCG757.39401E-826.2016643
TTACCGC450.001104296725.42362643
TCGGTTA1500.024.7460162
TGCCTAG450.001451263824.26084
TTTGCCT450.001451263824.26082
TCGCGTA952.8390787E-822.9839152
CTTACCG500.002085321422.79435742
TAAGCGA1500.022.31014438
TAGGGCT1004.888352E-821.834727
CTCGCGT1004.888352E-821.834721